PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00158366001
Common NameGSBRNA2T00158366001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 208aa    MW: 22588.9 Da    PI: 5.1468
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00158366001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.9e-20130164135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  GSBRNA2T00158366001 130 CQHCGADKTPQWRAGPSGPKTLCNACGVRYKSGRL 164
                          *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-17124174IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.912124160IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-16125187No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15128162IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.97E-17129178No hitNo description
PfamPF003205.1E-18130164IPR000679Zinc finger, GATA-type
PROSITE patternPS003440130155IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MESFMEELLN FSVPEEEGGA VVRSPKNIAR RKTGLRQTES FGLLNPDDEL GEVEEEDLEW  60
ISNKDAFPVI ETFVGVLPSE HFSVSSPERE ATEGKQLSPV SVLETSSQNI SITTTTTTSN  120
NSSGGSNRSC QHCGADKTPQ WRAGPSGPKT LCNACGVRYK SGRLVPEYRP ANSPTFSPEF  180
HSNSHRKIVE MRKHVVSSDG GGRQDCG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00158366001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466791.12e-93PREDICTED: GATA transcription factor 1-like isoform X1
SwissprotQ8LAU92e-45GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A078E1451e-152A0A078E145_BRANA; BnaC03g43410D protein
STRINGBra001925.1-P2e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-46GATA transcription factor 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]